5AVN	Isomerase	date	Jun 23, 2015
title	The 1.03 Angstrom Structure (P212121) Of Glucose Isomerase Crystallized In High-Strength Agarose Hydrogel
authors	S.Sugiyama, N.Shimizu, N.Maruyama, G.Sazaki, H.Adachi, K.Takano, S.Murakami, T.Inoue, Y.Mori, H.Matsumura
compound		source
Molecule: Xylose Isomerase Chain: A, B Synonym: Glucose Isomerase Ec: 5.3.1.5 Engineered: Yes		Organism_scientific: Streptomyces Rubiginosus Organism_taxid: 1929 Gene: Xyla Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 21 21 2	R_factor 0.127 R_Free 0.150
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.082 98.285 85.777 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.03 Å
ligand	CA, MN, SO4	enzyme	Isomerase E.C.5.3.1.5 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Growth of protein crystals in hydrogels prevents osmotic shock., Sugiyama S, Maruyama M, Sazaki G, Hirose M, Adachi H, Takano K, Murakami S, Inoue T, Mori Y, Matsumura H, J Am Chem Soc. 2012 Apr 4;134(13):5786-9. doi: 10.1021/ja301584y. Epub 2012 Mar, 27. PMID:22435400

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk] Biological Unit Coordinates (5avn.pdb1.gz) 152 Kb Biological Unit Coordinates (5avn.pdb2.gz) 149 Kb Biological Unit Coordinates (5avn.pdb3.gz) 298 Kb LPC: Ligand-Protein Contacts for 5AVN CSU: Contacts of Structural Units for 5AVN Structure Factors (3762 Kb) Retrieve 5AVN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AVN from S2C, [Save to disk] Re-refined 5avn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AVN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5AVN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5avn_B] [5avn] [5avn_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5AVN at PDBWiki (http://pdbwiki.org)

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