5AYG	Dna Binding Protein Inhibitor	date	Aug 20, 2015
title	Crystal Structure Of The Human Ror Gamma Ligand Binding Doma
authors	M.Noguchi, S.Doi, A.Nomura, M.Kikuwaka, K.Murase, K.Hirata, M.Kama T.Adachi
compound		source
Molecule: Nuclear Receptor Ror-Gamma Chain: A, B Fragment: Unp Residues 261-518 Synonym: Nuclear Receptor Rzr-Gamma,Nuclear Receptor Subfam Group F Member 3,Rar-Related Orphan Receptor C,Retinoid-Rel Orphan Receptor-Gamma; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rorc, Nr1f3, Rorg, Rzrg Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61	R_factor 0.184 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.240 99.240 127.840 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	4LQ	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	SAR Exploration Guided by LE and Fsp(3): Discovery of a Selective and Orally Efficacious RORgamma Inhibitor., Hirata K, Kotoku M, Seki N, Maeba T, Maeda K, Hirashima S, Sakai T, Obika S, Hori A, Hase Y, Yamaguchi T, Katsuda Y, Hata T, Miyagawa N, Arita K, Nomura Y, Asahina K, Aratsu Y, Kamada M, Adachi T, Noguchi M, Doi S, Crowe P, Bradley E, Steensma R, Tao H, Fenn M, Babine R, Li X, Thacher S, Hashimoto H, Shiozaki M, ACS Med Chem Lett. 2015 Nov 4;7(1):23-7. doi: 10.1021/acsmedchemlett.5b00253., eCollection 2016 Jan 14. PMID:26819660

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (5ayg.pdb1.gz) 38 Kb Biological Unit Coordinates (5ayg.pdb2.gz) 39 Kb LPC: Ligand-Protein Contacts for 5AYG CSU: Contacts of Structural Units for 5AYG Structure Factors (1239 Kb) Retrieve 5AYG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AYG from S2C, [Save to disk] Re-refined 5ayg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AYG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5AYG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ayg] [5ayg_B] [5ayg_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5AYG: [HOLI ] by SMART

Other resources with information on 5AYG

Community annotation for 5AYG at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---