OCA Atlas for 5B25

5B25

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

4QJ, GOL, MG, SO4, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, C, A, D

Primary reference

Discovery of Potent and Selective Inhibitors of Phosphodiesterase 1 for the Treatment of Cognitive Impairment Associated with Neurodegenerative and Neuropsychiatric Diseases., Li P, Zheng H, Zhao J, Zhang L, Yao W, Zhu H, Beard JD, Ida K, Lane W, Snell G, Sogabe S, Heyser CJ, Snyder GL, Hendrick JP, Vanover KE, Davis RE, Wennogle LP, J Med Chem. 2016 Feb 2. PMID:26789933

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (460 Kb) [Save to disk]

Biological Unit Coordinates (5b25.pdb1.gz) 116 Kb

Biological Unit Coordinates (5b25.pdb2.gz) 116 Kb

Biological Unit Coordinates (5b25.pdb3.gz) 117 Kb

Biological Unit Coordinates (5b25.pdb4.gz) 117 Kb

LPC: Ligand-Protein Contacts for 5B25

CSU: Contacts of Structural Units for 5B25

Structure Factors (2164 Kb)

Retrieve 5B25 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5B25 from S2C, [Save to disk]

Re-refined 5b25 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5B25 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5b25] [5b25_A] [5b25_B] [5b25_C] [5b25_D]

SWISS-PROT database:

Domain found in 5B25: [HDc ] by SMART

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