5B33	Dna Binding Protein	date	Feb 08, 2016
title	The Crystal Structure Of The H2az Nucleosome With H3.3.
authors	N.Horikoshi, H.Taguchi, Y.Arimura, H.Kurumizaka
compound		source
Molecule: Histone H3.3 Chain: A, E Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: H3f3a, H3.3a, H3f3, Pp781, H3f3b, H3.3b Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph3.3
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4; Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph4
Molecule: Histone H2a.Z Chain: C, G Synonym: H2az Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: H2afz, H2az Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph2a.Z.1
Molecule: Histone H2b Type 1-J Chain: D, H Synonym: Histone H2b.1,Histone H2b.R,H2br Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2bj, H2bfr Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph2b
Molecule: Dna (146-Mer) Chain: I, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5a Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgem-T Easy
symmetry	Space Group: P 21 21 21	R_factor 0.205 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.799 109.872 181.931 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.93 Å
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	Crystal structures of heterotypic nucleosomes containing histones H2A.Z and H2A., Horikoshi N, Arimura Y, Taguchi H, Kurumizaka H, Open Biol. 2016 Jun;6(6). pii: 160127. doi: 10.1098/rsob.160127. PMID:27358293

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk] Biological Unit Coordinates (5b33.pdb1.gz) 233 Kb CSU: Contacts of Structural Units for 5B33 Structure Factors (1119 Kb) Retrieve 5B33 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5B33 from S2C, [Save to disk] Re-refined 5b33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5B33 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5B33

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5b33_D] [5b33] [5b33_C] [5b33_B] [5b33_H] [5b33_E] [5b33_G] [5b33_F] [5b33_I] [5b33_A] [5b33_J] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5B33: [H2A] [H2B] [H3] [H4 ] by SMART

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