5B33 The crystal structure of the H2AZ nucleosome with H3.3. date
authors Horikoshi, N., Taguchi, H., Arimura, Y., Kurumizaka, H.
compound source
R_Free 0.2521
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.92
A, E

C, G

F, B

H, D

Primary referenceCrystal structures of heterotypic nucleosomes containing histones H2A.Z and H2A., Horikoshi N, Arimura Y, Taguchi H, Kurumizaka H, Open Biol. 2016 Jun;6(6). pii: 160127. doi: 10.1098/rsob.160127. PMID:27358293
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (5b33.pdb1.gz) 238 Kb
  • CSU: Contacts of Structural Units for 5B33
  • Structure Factors (1119 Kb)
  • Retrieve 5B33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B33 from S2C, [Save to disk]
  • Re-refined 5b33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5B33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5B33
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b33_D] [5b33] [5b33_C] [5b33_B] [5b33_H] [5b33_E] [5b33_G] [5b33_F] [5b33_I] [5b33_A] [5b33_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5B33: [H2A] [H2B] [H3] [H4 ] by SMART
  • Other resources with information on 5B33
  • Community annotation for 5B33 at PDBWiki (http://pdbwiki.org)

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