5B73	Metal Binding Protein	date	Jun 03, 2016
title	Crystal Structure Of Human Zmynd8 Phd-Bromo-Pwwp Domain
authors	H.Li, Y.Li, X.Zheng
compound		source
Molecule: Protein Kinase C-Binding Protein 1 Chain: A Fragment: Phd-Bromo-Pwwp Domain, Unp Residues 73-406 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Zmynd8 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.187 R_Free 0.224
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.083 67.999 70.309 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	ZMYND8 Reads the Dual Histone Mark H3K4me1-H3K14ac to Antagonize the Expression of Metastasis-Linked Genes., Li N, Li Y, Lv J, Zheng X, Wen H, Shen H, Zhu G, Chen TY, Dhar SS, Kan PY, Wang Z, Shiekhattar R, Shi X, Lan F, Chen K, Li W, Li H, Lee MG, Mol Cell. 2016 Aug 4;63(3):470-84. doi: 10.1016/j.molcel.2016.06.035. Epub 2016, Jul 28. PMID:27477906

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (5b73.pdb1.gz) 54 Kb LPC: Ligand-Protein Contacts for 5B73 CSU: Contacts of Structural Units for 5B73 Structure Factors (364 Kb) Retrieve 5B73 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5B73 from S2C, [Save to disk] Re-refined 5b73 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5B73 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5B73

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5b73] [5b73_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5B73: [BROMO] [PHD] [PWWP ] by SMART

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