5B74 Hydrolase date Jun 05, 2016
title Crystal Structure Of Conjoined Pyrococcus Furiosus L-Asparag Peptide
authors P.Sharma, R.Tomar, S.K.Nath, B.Kundu, F.Ashish
compound source
Molecule: L-Asparaginase
Chain: A
Fragment: N-Terminal Domain Unp Residues 1-182
Ec: 3.5.1.1
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus Dsm 3638
Organism_taxid: 186497
Strain: Dsm 3638
Gene: Pf2047
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a

Molecule: L-Asparaginase
Chain: B
Fragment: C-Terminal Domain Unp Residues 202-326
Ec: 3.5.1.1
Engineered: Yes

Organism_scientific: Pyrococcus Furiosus Dsm 3638
Organism_taxid: 186497
Strain: Dsm 3638
Gene: Pf2047
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a

Molecule: Leu-Val-Val-Asn
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
symmetry Space Group: P 65 2 2
R_factor 0.213 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.010 92.010 187.081 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.04 Å
ligand CL, FLC enzyme Hydrolase E.C.3.5.1.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (5b74.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 5B74
  • CSU: Contacts of Structural Units for 5B74
  • Structure Factors (1923 Kb)
  • Retrieve 5B74 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B74 from S2C, [Save to disk]
  • Re-refined 5b74 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5B74 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5B74
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b74_A] [5b74_B] [5b74_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5B74
  • Community annotation for 5B74 at PDBWiki (http://pdbwiki.org)

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