5BMM	Transferase Transferase Inhibitor	date	May 22, 2015
title	Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc25
authors	G.Georghiou, K.E.Guja, S.Aleem, R.E.Kleiner, D.R.Liu, W.T.Miller, Diaz, M.A.Seeliger
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src Chain: A, B Synonym: Proto-Oncogene C-Src,Pp60c-Src,P60-Src Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Gene: Src Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Macrocyclic Inhibitor Mc25b Chain: C, D Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.218 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.830 118.610 42.650 90.00 90.08 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	ALC, FUM, ORN, PFF, PPN	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk] Biological Unit Coordinates (5bmm.pdb1.gz) 90 Kb Biological Unit Coordinates (5bmm.pdb2.gz) 91 Kb LPC: Ligand-Protein Contacts for 5BMM CSU: Contacts of Structural Units for 5BMM Structure Factors (377 Kb) Retrieve 5BMM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5BMM from S2C, [Save to disk] Re-refined 5bmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5BMM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5BMM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5bmm_A] [5bmm_D] [5bmm_B] [5bmm] [5bmm_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5BMM: [TyrKc ] by SMART

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