5BPF		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ACT, ADP, GOL, NA	enzyme
Gene	YP
Gene Ontology	Chain Function Process Component D, C, A, B
Primary reference	Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop., Tran HT, Hong MK, Ngo HP, Huynh KH, Ahn YJ, Wang Z, Kang LW, Acta Crystallogr D Struct Biol. 2016 Jan;72(Pt 1):12-21. doi:, 10.1107/S2059798315021671. Epub 2016 Jan 1. PMID:26894530

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk] Biological Unit Coordinates (5bpf.pdb1.gz) 97 Kb Biological Unit Coordinates (5bpf.pdb2.gz) 99 Kb LPC: Ligand-Protein Contacts for 5BPF CSU: Contacts of Structural Units for 5BPF Structure Factors (1199 Kb) Retrieve 5BPF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5BPF from S2C, [Save to disk] Re-refined 5bpf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5BPF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5bpf] [5bpf_A] [5bpf_B] [5bpf_C] [5bpf_D] SWISS-PROT database:

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