5BQD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIntermolecular Interactions of Cardiac Transcription Factors NKX2.5 and TBX5., Pradhan L, Gopal S, Li S, Ashur S, Suryanarayanan S, Kasahara H, Nam HJ, Biochemistry. 2016 Mar 29;55(12):1702-10. doi: 10.1021/acs.biochem.6b00171. Epub , 2016 Mar 9. PMID:26926761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5bqd.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 5BQD
  • CSU: Contacts of Structural Units for 5BQD
  • Structure Factors (342 Kb)
  • Retrieve 5BQD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BQD from S2C, [Save to disk]
  • Re-refined 5bqd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BQD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bqd] [5bqd_A] [5bqd_B]
  • SWISS-PROT database:
  • Domain found in 5BQD: [TBOX ] by SMART

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