5BS3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MN, SO4, WCP enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, D


Primary referenceTricyclic 1,5-naphthyridinone oxabicyclooctane-linked novel bacterial topoisomerase inhibitors as broad-spectrum antibacterial agents-SAR of left-hand-side moiety (Part-2)., Singh SB, Kaelin DE, Wu J, Miesel L, Tan CM, Black T, Nargund R, Meinke PT, Olsen DB, Lagrutta A, Lu J, Patel S, Rickert KW, Smith RF, Soisson S, Sherer E, Joyce LA, Wei C, Peng X, Wang X, Fukuda H, Kishii R, Takei M, Takano H, Shibasaki M, Yajima M, Nishimura A, Shibata T, Fukuda Y, Bioorg Med Chem Lett. 2015 May 1;25(9):1831-5. doi: 10.1016/j.bmcl.2015.03.044., Epub 2015 Mar 24. PMID:25851938
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk]
  • Biological Unit Coordinates (5bs3.pdb1.gz) 226 Kb
  • LPC: Ligand-Protein Contacts for 5BS3
  • CSU: Contacts of Structural Units for 5BS3
  • Structure Factors (1483 Kb)
  • Retrieve 5BS3 in mmCIF format [Save to disk]
  • Re-refined 5bs3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5BS3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bs3] [5bs3_B] [5bs3_D] [5bs3_E] [5bs3_F]
  • SWISS-PROT database:
  • Domains found in 5BS3: [TOP2c] [TOP4c ] by SMART

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