5BUK Oxidoreductase date Jun 03, 2015
title Structure Of Flavin-Dependent Chlorinase Mpy16
authors V.Agarwal, G.V.Louie, J.P.Noel, B.S.Moore
compound source
Molecule: Fadh2-Dependent Halogenase
Chain: A, B
Engineered: Yes
Organism_scientific: Streptomyces Sp. Cnq-418
Organism_taxid: 467194
Gene: Mpy16
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.170 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.831 73.276 189.717 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand FAD, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBiosynthesis of coral settlement cue tetrabromopyrrole in marine bacteria by a uniquely adapted brominase-thioesterase enzyme pair., El Gamal A, Agarwal V, Diethelm S, Rahman I, Schorn MA, Sneed JM, Louie GV, Whalen KE, Mincer TJ, Noel JP, Paul VJ, Moore BS, Proc Natl Acad Sci U S A. 2016 Mar 21. pii: 201519695. PMID:27001835
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (5buk.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (5buk.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 5BUK
  • CSU: Contacts of Structural Units for 5BUK
  • Structure Factors (1101 Kb)
  • Retrieve 5BUK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BUK from S2C, [Save to disk]
  • Re-refined 5buk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BUK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BUK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5buk_A] [5buk] [5buk_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5BUK
  • Community annotation for 5BUK at PDBWiki (http://pdbwiki.org)

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