5BWR Transferase date Jun 08, 2015
title X-Ray Crystal Structure At 2.20a Resolution Of Human Mitocho Branched Chain Aminotransferase (Bcatm) Complexed With A Pyrazolopyrimidinone Fragment And An Internal Aldimine Link
authors D.Somers
compound source
Molecule: Branched-Chain-Amino-Acid Aminotransferase, Mitoc
Chain: A, B
Fragment: Residues 28-392
Synonym: Bcat(M),Placental Protein 18,Pp18
Ec: 2.6.1.42
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcat2, Bcatm, Bct2, Eca40
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet-28a
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.165 106.214 107.454 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 4VT, CL, EDO, PLP enzyme Transferase E.C.2.6.1.42 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe discovery of in vivo active mitochondrial branched-chain aminotransferase (BCATm) inhibitors by hybridising fragment and HTS hits., Bertrand SM, Ancellin N, Beaufils B, Bingham RP, Borthwick JA, Boullay AB, Boursier E, Carter PS, Chung CW, Churcher I, Dodic N, Fouchet MH, Fournier C, Francis P, Gummer LA, Herry K, Hobbs A, Hobbs CI, Homes P, Jamieson C, Nicodeme E, Pickett SD, Reid IH, Simpson GL, Sloan LA, Smith SE, Somers DO, Spitzfaden C, Suckling CJ, Valko K, Washio Y, Young RJ, J Med Chem. 2015 Jun 19. PMID:26090771
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (5bwr.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 5BWR
  • CSU: Contacts of Structural Units for 5BWR
  • Structure Factors (409 Kb)
  • Retrieve 5BWR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BWR from S2C, [Save to disk]
  • Re-refined 5bwr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BWR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BWR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bwr_B] [5bwr_A] [5bwr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5BWR
  • Community annotation for 5BWR at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science