5BZ7 Dna date Jun 11, 2015
title X-Ray Crystal Structure Of A Continuously Hydrogen Bonded 14 Lattice.
authors M.Saoji, P.J.Paukstelis
compound source
Molecule: Dna (5'-D(Gpgpapapapaptptptpgpgpapgp
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 31 2 1
R_factor 0.234 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.013 26.013 122.022 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.03 Å
ligand MG enzyme
Primary referenceSequence-dependent structural changes in a self-assembling DNA oligonucleotide., Saoji M, Paukstelis PJ, Acta Crystallogr D Biol Crystallogr. 2015 Dec 1;71(Pt 12):2471-8. doi:, 10.1107/S1399004715019598. Epub 2015 Nov 26. PMID:26627654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11 Kb) [Save to disk]
  • Biological Unit Coordinates (5bz7.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 5BZ7
  • CSU: Contacts of Structural Units for 5BZ7
  • Structure Factors (62 Kb)
  • Retrieve 5BZ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BZ7 from S2C, [Save to disk]
  • Re-refined 5bz7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BZ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BZ7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bz7_A] [5bz7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5BZ7
  • Community annotation for 5BZ7 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science