5C1B	Hydrolase	date	Jun 13, 2015
title	P97-Delta709-728 In Complex With A Ufd1-Shp Peptide
authors	P.Haenzelmann, H.Schindelin
compound		source
Molecule: Transitional Endoplasmic Reticulum Atpase Chain: A, B, C, D, E, F Synonym: Ter Atpase,15s Mg(2+)-Atpase P97 Subunit,Valosin-C Protein,Vcp; Ec: 3.6.4.6 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vcp Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_vector_type: Plasmid
Molecule: Ubiquitin Fusion Degradation Protein 1 Homolog Chain: V, U Fragment: Unp Residues 221-241 Synonym: Ub Fusion Protein 1 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: This Sequence Occurs Naturally In Humans
symmetry	Space Group: P 21 21 21	R_factor 0.198 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 140.715 180.664 254.958 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.08 Å
ligand	AGS, CL, GOL, MG	enzyme	Hydrolase E.C.3.6.4.6 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B deubiquitinase activator act...
Primary reference	Characterization of an Additional Binding Surface on the p97 N-Terminal Domain Involved in Bipartite Cofactor Interactions., Hanzelmann P, Schindelin H, Structure. 2016 Jan 5;24(1):140-7. doi: 10.1016/j.str.2015.10.027. Epub 2015 Dec , 17. PMID:26712280

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2159 Kb) [Save to disk] Biological Unit Coordinates (5c1b.pdb1.gz) 2143 Kb LPC: Ligand-Protein Contacts for 5C1B CSU: Contacts of Structural Units for 5C1B Structure Factors (6541 Kb) Retrieve 5C1B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5C1B from S2C, [Save to disk] Re-refined 5c1b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5C1B in 3D

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Visual 3D analysis of 5C1B

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5c1b_B] [5c1b_D] [5c1b_A] [5c1b_V] [5c1b_U] [5c1b] [5c1b_C] [5c1b_F] [5c1b_E] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5C1B: [AAA] [CDC48_2] [CDC48_N ] by SMART

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