5C7K date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, MAN, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


D


Primary referenceComplete epitopes for vaccine design derived from a crystal structure of the broadly neutralizing antibodies PGT128 and 8ANC195 in complex with an HIV-1 Env trimer., Kong L, Torrents de la Pena A, Deller MC, Garces F, Sliepen K, Hua Y, Stanfield RL, Sanders RW, Wilson IA, Acta Crystallogr D Biol Crystallogr. 2015 Oct 1;71(Pt 10):2099-108. doi:, 10.1107/S1399004715013917. Epub 2015 Sep 26. PMID:26457433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (5c7k.pdb1.gz) 642 Kb
  • LPC: Ligand-Protein Contacts for 5C7K
  • CSU: Contacts of Structural Units for 5C7K
  • Structure Factors (396 Kb)
  • Retrieve 5C7K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C7K from S2C, [Save to disk]
  • Re-refined 5c7k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C7K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c7k] [5c7k_A] [5c7k_B] [5c7k_C] [5c7k_D] [5c7k_E] [5c7k_F]
  • SWISS-PROT database:
  • Domains found in 5C7K: [IG_like] [IGv ] by SMART

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