5CC1	Dna Binding Protein Dna	date	Jul 01, 2015
title	S425g Glucocorticoid Receptor Dna Binding Domain - (+)Gre Co
authors	W.H.Hudson, E.A.Weikum, E.A.Ortlund
compound		source
Molecule: Glucocorticoid Receptor Chain: A, B, W, X Synonym: Gr,Nuclear Receptor Subfamily 3 Group C Member 1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr3c1, Grl Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'- D(Cpcpapgpapapcpapgpapgptpgptptpcptpg)-3' Chain: C, Z Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'- D(Tpcpapgpapapcpapcptpcptpgptptpcptpg)-3' Chain: D, Y Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: C 1 2 1	R_factor 0.245 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 176.721 39.122 132.099 90.00 101.10 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A, W, X, B
Primary reference	Distal substitutions drive divergent DNA specificity among paralogous transcription factors through subdivision of conformational space., Hudson WH, Kossmann BR, de Vera IM, Chuo SW, Weikum ER, Eick GN, Thornton JW, Ivanov IN, Kojetin DJ, Ortlund EA, Proc Natl Acad Sci U S A. 2016 Jan 12;113(2):326-31. doi:, 10.1073/pnas.1518960113. Epub 2015 Dec 29. PMID:26715749

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (5cc1.pdb1.gz) 39 Kb Biological Unit Coordinates (5cc1.pdb2.gz) 38 Kb LPC: Ligand-Protein Contacts for 5CC1 CSU: Contacts of Structural Units for 5CC1 Structure Factors (634 Kb) Retrieve 5CC1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CC1 from S2C, [Save to disk] Re-refined 5cc1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CC1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CC1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cc1_D] [5cc1_Z] [5cc1_A] [5cc1_W] [5cc1_C] [5cc1] [5cc1_B] [5cc1_X] [5cc1_Y] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5CC1: [ZnF_C4 ] by SMART

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