OCA Atlas for 5CD4

5CD4

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

23G, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, B, D, Q, N, F, O, S, R, G, P, E
K, W, V, J
M, A
T, H
U, I

Primary reference

Mechanism of CRISPR-RNA guided recognition of DNA targets in Escherichia coli., van Erp PB, Jackson RN, Carter J, Golden SM, Bailey S, Wiedenheft B, Nucleic Acids Res. 2015 Aug 3. pii: gkv793. PMID:26243775

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2249 Kb) [Save to disk]

Biological Unit Coordinates (5cd4.pdb1.gz) 1128 Kb

Biological Unit Coordinates (5cd4.pdb2.gz) 1105 Kb

LPC: Ligand-Protein Contacts for 5CD4

CSU: Contacts of Structural Units for 5CD4

Structure Factors (1938 Kb)

Retrieve 5CD4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5CD4 from S2C, [Save to disk]

Re-refined 5cd4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CD4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cd4_I] [5cd4] [5cd4_A] [5cd4_B] [5cd4_C] [5cd4_D] [5cd4_E] [5cd4_F] [5cd4_G] [5cd4_H] [5cd4_J] [5cd4_K] [5cd4_L] [5cd4_M] [5cd4_N] [5cd4_O] [5cd4_P] [5cd4_Q] [5cd4_R] [5cd4_S] [5cd4_T] [5cd4_U] [5cd4_V] [5cd4_W] [5cd4_X]

SWISS-PROT database:

Domain found in 5CD4: [CRISPR_assoc ] by SMART

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