5CD5		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BMA, MAN, NAG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Key gp120 Glycans Pose Roadblocks to the Rapid Development of VRC01-Class Antibodies in an HIV-1-Infected Chinese Donor., Kong L, Ju B, Chen Y, He L, Ren L, Liu J, Hong K, Su B, Wang Z, Ozorowski G, Ji X, Hua Y, Chen Y, Deller MC, Hao Y, Feng Y, Garces F, Wilson R, Dai K, O'Dell S, McKee K, Mascola JR, Ward AB, Wyatt RT, Li Y, Wilson IA, Zhu J, Shao Y, Immunity. 2016 Apr 19;44(4):939-50. doi: 10.1016/j.immuni.2016.03.006. Epub 2016 , Apr 5. PMID:27067056

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk] Biological Unit Coordinates (5cd5.pdb1.gz) 263 Kb LPC: Ligand-Protein Contacts for 5CD5 CSU: Contacts of Structural Units for 5CD5 Structure Factors (287 Kb) Retrieve 5CD5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CD5 from S2C, [Save to disk] Re-refined 5cd5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CD5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cd5] [5cd5_A] [5cd5_C] [5cd5_D] SWISS-PROT database: Domains found in 5CD5: [IG_like] [IGv ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---