5CDO	Isomerase	date	Jul 04, 2015
title	3.15a Structure Of Qpt-1 With S.Aureus Dna Gyrase And Dna
authors	B.D.Bax, V.Srikannathasan, P.F.Chan
compound		source
Molecule: Dna Gyrase Subunit A Chain: A, C, R, T Ec: 5.99.1.3 Engineered: Yes		Organism_scientific: Staphylococcus Aureus (Strain N315) Organism_taxid: 158879 Strain: N315 Gene: Gyra, Sa0006 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Gyrase Subunit B,Dna Gyrase Subunit B Chain: B, D, S, U Fragment: Residues 417-638,Residues 417-638 Ec: 5.99.1.3,5.99.1.3 Engineered: Yes		Organism_scientific: Staphylococcus Aureus (Strain N315) Organism_taxid: 158879 Strain: N315 Gene: Gyrb, Sa0005 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'- D(Pgpapgpcpgptpapcgpgpcpcpgptpapcpgpcptp Chain: E, F, V, W Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Synthetic Construct Expression_system_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.215 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.472 170.211 124.579 90.00 102.75 90.00
method	X-Ray Diffraction	resolution	3.15 Å
ligand	50M, 53L, 53M, GOL, MN, NA, PTR, SO4	enzyme	Isomerase E.C.5.99.1.3 BRENDA
Gene Ontology	Chain Function Process Component A, T, C, R S, D, B, U
Primary reference	Crystallization and initial crystallographic analysis of covalent DNA-cleavage complexes of Staphyloccocus aureus DNA gyrase with QPT-1, moxifloxacin and etoposide., Srikannathasan V, Wohlkonig A, Shillings A, Singh O, Chan PF, Huang J, Gwynn MN, Fosberry AP, Homes P, Hibbs M, Theobald AJ, Spitzfaden C, Bax BD, Acta Crystallogr F Struct Biol Commun. 2015 Oct 1;71(Pt 10):1242-6. doi:, 10.1107/S2053230X15015290. Epub 2015 Sep 23. PMID:26457513

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1382 Kb) [Save to disk] Biological Unit Coordinates (5cdo.pdb1.gz) 692 Kb Biological Unit Coordinates (5cdo.pdb2.gz) 683 Kb LPC: Ligand-Protein Contacts for 5CDO CSU: Contacts of Structural Units for 5CDO Structure Factors (627 Kb) Retrieve 5CDO in mmCIF format [Save to disk] Re-refined 5cdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cdo_B] [5cdo_W] [5cdo_F] [5cdo] [5cdo_C] [5cdo_E] [5cdo_R] [5cdo_D] [5cdo_V] [5cdo_T] [5cdo_A] [5cdo_U] [5cdo_S] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5CDO: [TOP2c] [TOP4c ] by SMART

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