5CDR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, A


D, B


Primary referenceStructural basis of DNA gyrase inhibition by antibacterial QPT-1, anticancer drug etoposide and moxifloxacin., Chan PF, Srikannathasan V, Huang J, Cui H, Fosberry AP, Gu M, Hann MM, Hibbs M, Homes P, Ingraham K, Pizzollo J, Shen C, Shillings AJ, Spitzfaden CE, Tanner R, Theobald AJ, Stavenger RA, Bax BD, Gwynn MN, Nat Commun. 2015 Dec 7;6:10048. doi: 10.1038/ncomms10048. PMID:26640131
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (460 Kb) [Save to disk]
  • Biological Unit Coordinates (5cdr.pdb1.gz) 452 Kb
  • LPC: Ligand-Protein Contacts for 5CDR
  • CSU: Contacts of Structural Units for 5CDR
  • Structure Factors (589 Kb)
  • Retrieve 5CDR in mmCIF format [Save to disk]
  • Re-refined 5cdr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CDR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cdr] [5cdr_A] [5cdr_B] [5cdr_C] [5cdr_D] [5cdr_E] [5cdr_F] [5cdr_G]
  • SWISS-PROT database:
  • Domains found in 5CDR: [TOP2c] [TOP4c ] by SMART

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