5CEF Oxidoreductase date Jul 06, 2015
title Cystal Structure Of Aspartate Semialdehyde Dehydrogenase Fro Cryptococcus Neoformans
authors G.P.Dahal, R.E.Viola
compound source
Molecule: Aspartate-Semialdehyde Dehydrogenase
Chain: A, B, C, D
Ec: 1.2.1.11
Engineered: Yes
Organism_scientific: Cryptococcus Neoformans Var. Neoforman
Organism_taxid: 214684
Gene: Cna02450
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.590 130.960 91.940 90.00 92.87 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand EDO enzyme Oxidoreductase E.C.1.2.1.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of a fungal form of aspartate semialdehyde dehydrogenase from Cryptococcus neoformans., Dahal G, Viola RE, Acta Crystallogr F Struct Biol Commun. 2015 Nov 1;71(Pt 11):1365-71. doi:, 10.1107/S2053230X15017495. Epub 2015 Oct 23. PMID:26527262
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (5cef.pdb1.gz) 227 Kb
  • LPC: Ligand-Protein Contacts for 5CEF
  • CSU: Contacts of Structural Units for 5CEF
  • Structure Factors (3168 Kb)
  • Retrieve 5CEF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CEF from S2C, [Save to disk]
  • Re-refined 5cef structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CEF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CEF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cef_D] [5cef_B] [5cef_C] [5cef] [5cef_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CEF: [Semialdhyde_dh ] by SMART
  • Other resources with information on 5CEF
  • Community annotation for 5CEF at PDBWiki (http://pdbwiki.org)

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