5CEV Hydrolase date Mar 16, 1999
title Arginase From Bacillus Caldevelox, L-Lysine Complex
authors M.C.Bewley, P.D.Jeffrey, M.L.Patchett, Z.F.Kanyo, E.N.Baker
compound source
Molecule: Protein (Arginase)
Chain: A, B, C, D, E, F
Ec: 3.5.3.1
Engineered: Yes
Other_details: Each Molecule Has An L-Lysine Molecule Bound Active Site (These Are Labelled R 401 - R 406) And A Guanid An External, Inter-Subunit Site (Labelled R 407 - R 412).
Organism_scientific: Bacillus Caldovelox
Organism_taxid: 33931
Strain: Bacillus Species Dsm 411
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21
Other_details: Bacillus Species Dsm 411
symmetry Space Group: C 2 2 21
R_factor 0.212 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.400 277.000 138.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GAI, LYS, MN enzyme Hydrolase E.C.3.5.3.1 BRENDA
related structures by homologous chain: 1CEV, 4CEV
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structures of Bacillus caldovelox arginase in complex with substrate and inhibitors reveal new insights into activation, inhibition and catalysis in the arginase superfamily., Bewley MC, Jeffrey PD, Patchett ML, Kanyo ZF, Baker EN, Structure Fold Des 1999 Apr 15;7(4):435-48. PMID:10196128
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (5cev.pdb1.gz) 278 Kb
  • Biological Unit Coordinates (5cev.pdb2.gz) 277 Kb
  • LPC: Ligand-Protein Contacts for 5CEV
  • CSU: Contacts of Structural Units for 5CEV
  • Likely Quarternary Molecular Structure file(s) for 5CEV
  • Retrieve 5CEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CEV from S2C, [Save to disk]
  • View 5CEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CEV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5CEV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5ceva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d5cevb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d5cevc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d5cevd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d5ceve_, region E [Jmol] [rasmolscript] [script source]
        - Domain d5cevf_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cev_D] [5cev_A] [5cev_B] [5cev] [5cev_C] [5cev_E] [5cev_F]
  • SWISS-PROT database: [P53608]
  • Domain organization of [ARGI_BACCD] by SWISSPFAM
  • Other resources with information on 5CEV
  • Community annotation for 5CEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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