5CNH Transport Protein date Jul 17, 2015
title X-Ray Structure Of Perdeuterated Wild-Type Ttr At 1.42a Reso
authors A.W.Yee, M.Moulin, E.Mossou, M.Haertlein, E.P.Mitchell, J.B.Coope V.T.Forsyth
compound source
Molecule: Transthyretin
Chain: A, B
Fragment: Unp Residues 21-147
Synonym: Attr,Prealbumin,Tbpa
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ttr, Palb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
symmetry Space Group: P 21 21 2
R_factor 0.152 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.640 85.793 64.158 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.42 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


    • Primary referenceImpact of Deuteration on the Assembly Kinetics of Transthyretin Monitored by Native Mass Spectrometry and Implications for Amyloidoses., Yee AW, Moulin M, Breteau N, Haertlein M, Mitchell EP, Cooper JB, Boeri Erba E, Forsyth VT, Angew Chem Int Ed Engl. 2016 Jun 17. doi: 10.1002/anie.201602747. PMID:27311939
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (5cnh.pdb1.gz) 152 Kb
  • CSU: Contacts of Structural Units for 5CNH
  • Structure Factors (796 Kb)
  • Retrieve 5CNH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CNH from S2C, [Save to disk]
  • Re-refined 5cnh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CNH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CNH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cnh] [5cnh_A] [5cnh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CNH: [TR_THY ] by SMART
    • Other resources with information on 5CNH
  • Community annotation for 5CNH at PDBWiki (http://pdbwiki.org)

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