5CO0	Transcription Dna	date	Jul 18, 2015
title	Crystal Structure Of The Mterf1 Y288a Substitution Bound To Termination Sequence.
authors	J.Byrnes, K.Hauser, L.Norona, E.Mejia, C.Simmerling, M.Garcia-Dia
compound		source
Molecule: Transcription Termination Factor 1, Mitochondrial Chain: O Synonym: Cdna Flj51270,Highly Similar To Transcription Term Factor,Mitochondrial; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mterf1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Arctic Express De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptev-Hmbp3
Molecule: Dna (5'- D(Aptptpapcpcpgpgpgpcptpcptpgpcpcpaptpcp 3'); Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
Molecule: Dna (5'- D(Tpapapgpaptpgpgpcpapgpapgpcpcpcpgpgptp 3'); Chain: E Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: C 2 2 21	R_factor 0.206 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.537 90.440 160.514 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.65 Å
ligand	K	enzyme
Gene Ontology	Chain Function Process Component O
Primary reference	Base flipping by MTERF1 can accommodate multiple conformations and occurs in a stepwise fashion., Byrnes J, Hauser K, Norona L, Mejia E, Simmerling C, Garcia-Diaz M, J Mol Biol. 2015 Oct 30. pii: S0022-2836(15)00614-2. doi:, 10.1016/j.jmb.2015.10.021. PMID:26523681

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (5co0.pdb1.gz) 70 Kb LPC: Ligand-Protein Contacts for 5CO0 CSU: Contacts of Structural Units for 5CO0 Structure Factors (1129 Kb) Retrieve 5CO0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CO0 from S2C, [Save to disk] Re-refined 5co0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CO0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CO0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5co0_O] [5co0_E] [5co0] [5co0_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5CO0: [Mterf ] by SMART

Other resources with information on 5CO0

Community annotation for 5CO0 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---