5CTP Transferase date Jul 24, 2015
title Crystal Structure Of Ck2alpha With N-(3-(3-Chloro-4-(Phenyl) Benzylamino)Propyl)Acetamide Bound
authors P.Brear, C.De Fusco, K.H.Georgiou, D.Spring, M.Hyvonen
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: A, B
Fragment: Residues 2-329 And N-Terminal Extension Gsmdiefdddadddgsgsgsgsgs;
Synonym: Ck II Alpha
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk2a1, Ck2a1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phat4
symmetry Space Group: C 2 2 21
R_factor 0.185 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.067 68.858 333.876 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.03 Å
ligand 54R, ACT, PO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA fragment-based approach leading to the discovery of a novel binding site and the selective CK2 inhibitor CAM4066., De Fusco C, Brear P, Iegre J, Georgiou KH, Sore HF, Hyvonen M, Spring DR, Bioorg Med Chem. 2017 Apr 30. pii: S0968-0896(16)31479-1. doi:, 10.1016/j.bmc.2017.04.037. PMID:28495381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (5ctp.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (5ctp.pdb2.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 5CTP
  • CSU: Contacts of Structural Units for 5CTP
  • Structure Factors (2660 Kb)
  • Retrieve 5CTP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CTP from S2C, [Save to disk]
  • Re-refined 5ctp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CTP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CTP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ctp] [5ctp_B] [5ctp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CTP: [S_TKc ] by SMART
  • Other resources with information on 5CTP
  • Community annotation for 5CTP at PDBWiki (http://pdbwiki.org)

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