OCA Atlas for 5D1J

5D1J

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

56H

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

N-(cycloalkylamino)acyl-2-aminothiazole inhibitors of cyclin-dependent kinase 2. N-[5-[[[5-(1,1-dimethylethyl)-2-oxazolyl]methyl]thio]-2-thiazolyl]-4- piperidinecarboxamide (BMS-387032), a highly efficacious and selective antitumor agent., Misra RN, Xiao HY, Kim KS, Lu S, Han WC, Barbosa SA, Hunt JT, Rawlins DB, Shan W, Ahmed SZ, Qian L, Chen BC, Zhao R, Bednarz MS, Kellar KA, Mulheron JG, Batorsky R, Roongta U, Kamath A, Marathe P, Ranadive SA, Sack JS, Tokarski JS, Pavletich NP, Lee FY, Webster KR, Kimball SD, J Med Chem. 2004 Mar 25;47(7):1719-28. PMID:15027863

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]

Biological Unit Coordinates (5d1j.pdb1.gz) 46 Kb

LPC: Ligand-Protein Contacts for 5D1J

CSU: Contacts of Structural Units for 5D1J

Structure Factors (666 Kb)

Retrieve 5D1J in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5D1J from S2C, [Save to disk]

Re-refined 5d1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D1J in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d1j] [5d1j_A]

SWISS-PROT database:

Domain found in 5D1J: [S_TKc ] by SMART

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