5D1K		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	EDO, OXL, PEG, ZN	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B., Li S, Liang YH, Mariano J, Metzger MB, Stringer DK, Hristova VA, Li J, Randazzo PA, Tsai YC, Ji X, Weissman AM, J Biol Chem. 2015 Dec 18;290(51):30225-39. doi: 10.1074/jbc.M115.685867. Epub, 2015 Oct 16. PMID:26475854

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (5d1k.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 5D1K CSU: Contacts of Structural Units for 5D1K Structure Factors (227 Kb) Retrieve 5D1K in mmCIF format [Save to disk] Re-refined 5d1k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D1K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d1k] [5d1k_A] [5d1k_B] SWISS-PROT database: Domains found in 5D1K: [RING] [UBCc ] by SMART

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