5D3V date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FLC enzyme
Primary referenceStructural and Biochemical Characterization of the Catalytic Core of the Metastatic Factor P-Rex1 and Its Regulation by PtdIns(3,4,5)P3., Cash JN, Davis EM, Tesmer JJ, Structure. 2016 May 3;24(5):730-40. doi: 10.1016/j.str.2016.02.022. Epub 2016 Apr, 14. PMID:27150042
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (5d3v.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (5d3v.pdb2.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 5D3V
  • CSU: Contacts of Structural Units for 5D3V
  • Structure Factors (720 Kb)
  • Retrieve 5D3V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D3V from S2C, [Save to disk]
  • Re-refined 5d3v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D3V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d3v_A] [5d3v_B] [5d3v]
  • SWISS-PROT database:
  • Domain found in 5D3V: [PH ] by SMART

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