5D4A Lipid Binding Protein date Aug 07, 2015
title Crystal Structure Of Fabp4 In Complex With 3-(2-Phenyl-1h-In Propanoic Acid
authors U.Tagami, K.Takahashi, S.Igarashi, C.Ejima, T.Yoshida, S.Takeshit W.Miyanaga, M.Sugiki, M.Tokumasu, T.Hatanaka, T.Kashiwagi, K.Ish H.Miyano, T.Mizukoshi
compound source
Molecule: Fatty Acid-Binding Protein, Adipocyte
Chain: A
Synonym: Adipocyte Lipid-Binding Protein,Albp,Adipocyte-Typ Acid-Binding Protein,Afabp,Fatty Acid-Binding Protein 4;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fabp4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.161 53.719 74.291 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 57Q enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInteraction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis., Tagami U, Takahashi K, Igarashi S, Ejima C, Yoshida T, Takeshita S, Miyanaga W, Sugiki M, Tokumasu M, Hatanaka T, Kashiwagi T, Ishikawa K, Miyano H, Mizukoshi T, ACS Med Chem Lett. 2016 Feb 16;7(4):435-9. doi: 10.1021/acsmedchemlett.6b00040., eCollection 2016 Apr 14. PMID:27096055
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (5d4a.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 5D4A
  • CSU: Contacts of Structural Units for 5D4A
  • Structure Factors (256 Kb)
  • Retrieve 5D4A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D4A from S2C, [Save to disk]
  • Re-refined 5d4a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D4A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5D4A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d4a_A] [5d4a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5D4A
  • Community annotation for 5D4A at PDBWiki (http://pdbwiki.org)

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