5D4N Signaling Protein date Aug 08, 2015
title Structure Of Cpii Bound To Adp, Amp And Acetate, From Thiomo Intermedia K12
authors N.M.Wheatley, J.Ngo, D.Cascio, M.R.Sawaya, T.O.Yeates
compound source
Molecule: Nitrogen Regulatory Protein P-II
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Thiomonas Intermedia (Strain K12)
Organism_taxid: 75379
Strain: K12
Gene: Tint_0114
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.530 75.410 79.550 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ACT, ADP, AMP enzyme
Gene TINT
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • enzyme regulator activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (5d4n.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 5D4N
  • CSU: Contacts of Structural Units for 5D4N
  • Structure Factors (955 Kb)
  • Retrieve 5D4N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D4N from S2C, [Save to disk]
  • Re-refined 5d4n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D4N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5D4N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d4n_A] [5d4n_B] [5d4n_C] [5d4n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5D4N
  • Community annotation for 5D4N at PDBWiki (http://pdbwiki.org)

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