5D5O date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand SO4 enzyme
Primary referenceIdentification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis., Fujishiro T, Bai L, Xu T, Xie X, Schick M, Kahnt J, Rother M, Hu X, Ermler U, Shima S, Angew Chem Int Ed Engl. 2016 Jul 8. doi: 10.1002/anie.201604352. PMID:27391308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (669 Kb) [Save to disk]
  • Biological Unit Coordinates (5d5o.pdb1.gz) 168 Kb
  • Biological Unit Coordinates (5d5o.pdb2.gz) 167 Kb
  • Biological Unit Coordinates (5d5o.pdb3.gz) 168 Kb
  • Biological Unit Coordinates (5d5o.pdb4.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 5D5O
  • CSU: Contacts of Structural Units for 5D5O
  • Structure Factors (1392 Kb)
  • Retrieve 5D5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D5O from S2C, [Save to disk]
  • Re-refined 5d5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d5o] [5d5o_A] [5d5o_B] [5d5o_C] [5d5o_D] [5d5o_E] [5d5o_F] [5d5o_G] [5d5o_H]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science