5D7U		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	IPA	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Cryo-EM reveals a novel octameric integrase structure for betaretroviral intasome function., Ballandras-Colas A, Brown M, Cook NJ, Dewdney TG, Demeler B, Cherepanov P, Lyumkis D, Engelman AN, Nature. 2016 Feb 18;530(7590):358-61. doi: 10.1038/nature16955. PMID:26887496

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (5d7u.pdb1.gz) 20 Kb Biological Unit Coordinates (5d7u.pdb2.gz) 21 Kb LPC: Ligand-Protein Contacts for 5D7U CSU: Contacts of Structural Units for 5D7U Structure Factors (960 Kb) Retrieve 5D7U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D7U from S2C, [Save to disk] Re-refined 5d7u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D7U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d7u] [5d7u_A] [5d7u_B] SWISS-PROT database:

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