5D8K Transcription Dna date Aug 17, 2015
title Human Hsf2 Dna-Binding Domain Bound To 2-Site Hse Dna At 1.7 Angstroms Resolution
authors A.M.Jaeger, C.W.Pemble, D.J.Thiele
compound source
Molecule: Dna (5'-D(Gpgptptpcptpapgpapapcpc)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Heat Shock Factor Protein 2
Chain: B
Synonym: Hsf 2,Heat Shock Transcription Factor 2,Hstf 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsf2, Hstf2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 1 2 1
R_factor 0.148 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.883 39.631 39.393 90.00 91.43 90.00
method X-Ray Diffractionresolution 1.73 Å
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructures of HSF2 reveal mechanisms for differential regulation of human heat-shock factors., Jaeger AM, Pemble CW 4th, Sistonen L, Thiele DJ, Nat Struct Mol Biol. 2016 Jan 4. doi: 10.1038/nsmb.3150. PMID:26727490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (5d8k.pdb1.gz) 141 Kb
  • CSU: Contacts of Structural Units for 5D8K
  • Structure Factors (105 Kb)
  • Retrieve 5D8K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D8K from S2C, [Save to disk]
  • Re-refined 5d8k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D8K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5D8K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d8k_B] [5d8k_A] [5d8k]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5D8K: [HSF ] by SMART
    • Other resources with information on 5D8K
  • Community annotation for 5D8K at PDBWiki (http://pdbwiki.org)

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