OCA Atlas for 5D9A

5D9A

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A, J, D, G	nuclease activity endonuclease activity
E, K, H, B	RNA-directed 5'-3' RNA polym...
L, I, C, F	RNA-directed 5'-3' RNA polym...

Primary reference

Crystal structure of the RNA-dependent RNA polymerase from influenza C virus., Hengrung N, El Omari K, Serna Martin I, Vreede FT, Cusack S, Rambo RP, Vonrhein C, Bricogne G, Stuart DI, Grimes JM, Fodor E, Nature. 2015 Nov 5;527(7576):114-7. doi: 10.1038/nature15525. Epub 2015 Oct 26. PMID:26503046

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1408 Kb) [Save to disk]

Biological Unit Coordinates (5d9a.pdb1.gz) 360 Kb

Biological Unit Coordinates (5d9a.pdb2.gz) 362 Kb

Biological Unit Coordinates (5d9a.pdb3.gz) 359 Kb

Biological Unit Coordinates (5d9a.pdb4.gz) 362 Kb

CSU: Contacts of Structural Units for 5D9A

Structure Factors (4940 Kb)

Retrieve 5D9A in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5D9A from S2C, [Save to disk]

Re-refined 5d9a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D9A in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d9a] [5d9a_A] [5d9a_B] [5d9a_C] [5d9a_D] [5d9a_E] [5d9a_F] [5d9a_G] [5d9a_H] [5d9a_I] [5d9a_J] [5d9a_K] [5d9a_L]

SWISS-PROT database:

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