OCA Atlas for 5DA5

5DA5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, FE, GOA

enzyme

Gene

RRU

Primary reference

Structural characterization of encapsulated ferritin provides insight into iron storage in bacterial nanocompartments., He D, Hughes S, Vanden-Hehir S, Georgiev A, Altenbach K, Tarrant E, Mackay CL, Waldron KJ, Clarke DJ, Marles-Wright J, Elife. 2016 Aug 16;5. pii: e18972. doi: 10.7554/eLife.18972. PMID:27529188

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (868 Kb) [Save to disk]

Biological Unit Coordinates (5da5.pdb1.gz) 291 Kb

Biological Unit Coordinates (5da5.pdb2.gz) 290 Kb

Biological Unit Coordinates (5da5.pdb3.gz) 286 Kb

LPC: Ligand-Protein Contacts for 5DA5

CSU: Contacts of Structural Units for 5DA5

Structure Factors (10898 Kb)

Retrieve 5DA5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5DA5 from S2C, [Save to disk]

Re-refined 5da5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DA5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5da5] [5da5_A] [5da5_B] [5da5_C] [5da5_D] [5da5_E] [5da5_F] [5da5_G] [5da5_H] [5da5_I] [5da5_J] [5da5_K] [5da5_L] [5da5_M] [5da5_N] [5da5_O] [5da5_P] [5da5_Q] [5da5_R] [5da5_S] [5da5_T] [5da5_U] [5da5_V] [5da5_W] [5da5_X] [5da5_Y] [5da5_Z] [5da5_a] [5da5_b] [5da5_c] [5da5_d]

SWISS-PROT database:

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