5DA5	Oxidoreductase	date	Aug 19, 2015
title	Crystal Structure Of Rhodospirillum Rubrum Rru_a0973
authors	D.He, S.Vanden Hehier, A.Georgiev, K.Altenbach, E.Tarrant, C.L.Ma K.J.Waldron, D.J.Clarke, J.Marles-Wright
compound		source
Molecule: Rru_a0973 Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, A, B, C, D; Fragment: Unp Residues 1-96 Engineered: Yes		Organism_scientific: Rhodospirillum Rubrum Organism_taxid: 1085 Gene: Rru_a0973 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 1 21 1	R_factor 0.171 R_Free 0.206
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.184 120.533 140.250 90.00 95.36 90.00
method	X-Ray Diffraction	resolution	2.06 Å
ligand	CA, FE, GOA	enzyme
Gene	RRU
Primary reference	Structural characterization of encapsulated ferritin provides insight into iron storage in bacterial nanocompartments., He D, Hughes S, Vanden-Hehir S, Georgiev A, Altenbach K, Tarrant E, Mackay CL, Waldron KJ, Clarke DJ, Marles-Wright J, Elife. 2016 Aug 16;5. pii: e18972. doi: 10.7554/eLife.18972. PMID:27529188

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (868 Kb) [Save to disk] Biological Unit Coordinates (5da5.pdb1.gz) 291 Kb Biological Unit Coordinates (5da5.pdb2.gz) 290 Kb Biological Unit Coordinates (5da5.pdb3.gz) 286 Kb LPC: Ligand-Protein Contacts for 5DA5 CSU: Contacts of Structural Units for 5DA5 Structure Factors (10898 Kb) Retrieve 5DA5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DA5 from S2C, [Save to disk] Re-refined 5da5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DA5 in 3D

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Visual 3D analysis of 5DA5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5da5_D] [5da5_W] [5da5_H] [5da5_E] [5da5_Z] [5da5_L] [5da5_O] [5da5] [5da5_T] [5da5_Y] [5da5_M] [5da5_S] [5da5_A] [5da5_I] [5da5_N] [5da5_V] [5da5_C] [5da5_G] [5da5_J] [5da5_b] [5da5_R] [5da5_X] [5da5_c] [5da5_K] [5da5_B] [5da5_a] [5da5_d] [5da5_Q] [5da5_P] [5da5_F] [5da5_U] SWISS-PROT database: Domain organization of by SWISSPFAM

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