5DAL Transferase date Aug 20, 2015
title Crystal Structure Of Human Glutathione Transferase Pi Comple Metalloid In The Presence Of Glutathione
authors L.J.Parker, M.W.Parker, C.J.Morton
compound source
Molecule: Glutathione S-Transferase P
Chain: A
Synonym: Gst Class-Pi,Gstp1-1
Ec: 2.5.1.18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gstp1, Faees3, Gst3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glutathione S-Transferase P
Chain: B
Synonym: Gst Class-Pi,Gstp1-1
Ec: 2.5.1.18
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gstp1, Faees3, Gst3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.180 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.550 90.220 68.670 90.00 98.01 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand 5AU, CSO, GSH, MES, PA0, SO4 enzyme Transferase E.C.2.5.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • glutathione peroxidase activ...
  • protein binding


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (5dal.pdb1.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 5DAL
  • CSU: Contacts of Structural Units for 5DAL
  • Structure Factors (4397 Kb)
  • Retrieve 5DAL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DAL from S2C, [Save to disk]
  • Re-refined 5dal structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DAL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DAL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dal_A] [5dal_B] [5dal]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DAL
  • Community annotation for 5DAL at PDBWiki (http://pdbwiki.org)

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