5DC4	Protein Binding	date	Aug 23, 2015
title	Crystal Structure Of Monobody As25abl1 Sh2 Domain Complex,
authors	J.B.Wojcik, A.Koide, S.Koide
compound		source
Molecule: Tyrosine-Protein Kinase Abl1 Chain: A Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 1,A Tyrosine-Protein Kinase 1,Proto-Oncogene C-Abl,P150; Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Abl1, Abl, Jtk7 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Phft2
Molecule: As25 Monobody Chain: B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Phft2
symmetry	Space Group: P 21 21 21	R_factor 0.144 R_Free 0.190
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.281 74.928 39.229 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.48 Å
ligand	GOL	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Allosteric Inhibition of Bcr-Abl Kinase by High-Affinity Monobody Inhibitors Directed to the SH2-Kinase Interface., Wojcik J, Lamontanara AJ, Grabe G, Koide A, Akin L, Gerig B, Hantschel O, Koide S, J Biol Chem. 2016 Feb 24. pii: jbc.M115.707901. PMID:26912659

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (5dc4.pdb1.gz) 35 Kb LPC: Ligand-Protein Contacts for 5DC4 CSU: Contacts of Structural Units for 5DC4 Structure Factors (690 Kb) Retrieve 5DC4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DC4 from S2C, [Save to disk] Re-refined 5dc4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DC4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DC4

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dc4] [5dc4_B] [5dc4_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5DC4: [FN3] [SH2 ] by SMART

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