5DE1 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 59D, NAP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNew IDH1 mutant inhibitors for treatment of acute myeloid leukemia., Okoye-Okafor UC, Bartholdy B, Cartier J, Gao EN, Pietrak B, Rendina AR, Rominger C, Quinn C, Smallwood A, Wiggall KJ, Reif AJ, Schmidt SJ, Qi H, Zhao H, Joberty G, Faelth-Savitski M, Bantscheff M, Drewes G, Duraiswami C, Brady P, Groy A, Narayanagari SR, Antony-Debre I, Mitchell K, Wang HR, Kao YR, Christopeit M, Carvajal L, Barreyro L, Paietta E, Makishima H, Will B, Concha N, Adams ND, Schwartz B, McCabe MT, Maciejewski J, Verma A, Steidl U, Nat Chem Biol. 2015 Nov;11(11):878-886. doi: 10.1038/nchembio.1930. Epub 2015 Oct, 5. PMID:26436839
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (5de1.pdb1.gz) 255 Kb
  • LPC: Ligand-Protein Contacts for 5DE1
  • CSU: Contacts of Structural Units for 5DE1
  • Structure Factors (796 Kb)
  • Retrieve 5DE1 in mmCIF format [Save to disk]
  • Re-refined 5de1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DE1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5de1] [5de1_A] [5de1_B]
  • SWISS-PROT database:
  • Domain found in 5DE1: [Iso_dh ] by SMART

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