5DEA Crystal structure of the complex between human FMRP RGG motif and G-quadruplex RNA, cesium bound form. date
authors Vasilyev, N., Polonskaia, A., Darnell, J.C., Darnell, R.B., Patel, D.J., Serganov, A.
compound source
R_Free 0.2256
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand CS, K enzyme
Primary referenceCrystal structure reveals specific recognition of a G-quadruplex RNA by a beta-turn in the RGG motif of FMRP., Vasilyev N, Polonskaia A, Darnell JC, Darnell RB, Patel DJ, Serganov A, Proc Natl Acad Sci U S A. 2015 Sep 15. pii: 201515737. PMID:26374839
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (5dea.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (5dea.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 5DEA
  • CSU: Contacts of Structural Units for 5DEA
  • Structure Factors (72 Kb)
  • Retrieve 5DEA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DEA from S2C, [Save to disk]
  • Re-refined 5dea structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DEA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DEA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dea_A] [5dea_D] [5dea_C] [5dea] [5dea_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DEA
  • Community annotation for 5DEA at PDBWiki (http://pdbwiki.org)

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