5DFB date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 2PE, GOL, NI enzyme
Primary referenceNew Synthetic Routes to Triazolo-benzodiazepine Analogues: Expanding the Scope of the Bump-and-Hole Approach for Selective Bromo and Extra-Terminal (BET) Bromodomain Inhibition., Baud MG, Lin-Shiao E, Zengerle M, Tallant C, Ciulli A, J Med Chem. 2016 Feb 25;59(4):1492-500. doi: 10.1021/acs.jmedchem.5b01135. Epub, 2015 Oct 1. PMID:26367539
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (5dfb.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 5DFB
  • CSU: Contacts of Structural Units for 5DFB
  • Structure Factors (421 Kb)
  • Retrieve 5DFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DFB from S2C, [Save to disk]
  • Re-refined 5dfb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dfb] [5dfb_A]
  • SWISS-PROT database:
  • Domain found in 5DFB: [BROMO ] by SMART

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