5DFJ		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	3DR, CL, EDO	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Capturing snapshots of APE1 processing DNA damage., Freudenthal BD, Beard WA, Cuneo MJ, Dyrkheeva NS, Wilson SH, Nat Struct Mol Biol. 2015 Nov;22(11):924-31. doi: 10.1038/nsmb.3105. Epub 2015, Oct 12. PMID:26458045

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk] Biological Unit Coordinates (5dfj.pdb1.gz) 72 Kb Biological Unit Coordinates (5dfj.pdb2.gz) 48 Kb LPC: Ligand-Protein Contacts for 5DFJ CSU: Contacts of Structural Units for 5DFJ Structure Factors (610 Kb) Retrieve 5DFJ in mmCIF format [Save to disk] Re-refined 5dfj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DFJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dfj] [5dfj_A] [5dfj_B] [5dfj_P] [5dfj_V] SWISS-PROT database:

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