5DFP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 59U, DMS, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of Selective PAK1 Inhibitor G-5555: Improving Properties by Employing an Unorthodox Low-pK a Polar Moiety., Ndubaku CO, Crawford JJ, Drobnick J, Aliagas I, Campbell D, Dong P, Dornan LM, Duron S, Epler J, Gazzard L, Heise CE, Hoeflich KP, Jakubiak D, La H, Lee W, Lin B, Lyssikatos JP, Maksimoska J, Marmorstein R, Murray LJ, O'Brien T, Oh A, Ramaswamy S, Wang W, Zhao X, Zhong Y, Blackwood E, Rudolph J, ACS Med Chem Lett. 2015 Oct 31;6(12):1241-6. doi: 10.1021/acsmedchemlett.5b00398., eCollection 2015 Dec 10. PMID:26713112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (5dfp.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 5DFP
  • CSU: Contacts of Structural Units for 5DFP
  • Structure Factors (281 Kb)
  • Retrieve 5DFP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DFP from S2C, [Save to disk]
  • Re-refined 5dfp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DFP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dfp] [5dfp_A]
  • SWISS-PROT database:
  • Domain found in 5DFP: [S_TKc ] by SMART

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