5DFV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceVH-VL orientation prediction for antibody humanization candidate selection: A case study., Bujotzek A, Lipsmeier F, Harris SF, Benz J, Kuglstatter A, Georges G, MAbs. 2015 Dec 4:0. PMID:26637054
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (5dfv.pdb1.gz) 155 Kb
  • CSU: Contacts of Structural Units for 5DFV
  • Structure Factors (805 Kb)
  • Retrieve 5DFV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DFV from S2C, [Save to disk]
  • Re-refined 5dfv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DFV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dfv] [5dfv_A] [5dfv_B] [5dfv_C] [5dfv_D] [5dfv_E] [5dfv_F]
  • SWISS-PROT database:
  • Domains found in 5DFV: [IG_like] [IGv ] by SMART

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