5DG4	Transport Protein	date	Aug 27, 2015
title	Crystal Structure Of Monomer Human Cellular Retinol Binding II-Y60l
authors	Z.Assar, Z.Nossoni, W.Wang, J.H.Gieger, B.Borhan
compound		source
Molecule: Retinol-Binding Protein 2 Chain: A, B, C, D Synonym: Cellular Retinol-Binding Protein II,Crbp-II Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rbp2, Crbp2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21-De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet17b
symmetry	Space Group: P 1	R_factor 0.224 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 29.526 36.224 129.086 84.34 80.26 67.47
method	X-Ray Diffraction	resolution	1.50 Å
ligand	ACT	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Domain-Swapped Dimers of Intracellular Lipid-Binding Proteins: Evidence for Ordered Folding Intermediates., Assar Z, Nossoni Z, Wang W, Santos EM, Kramer K, McCornack C, Vasileiou C, Borhan B, Geiger JH, Structure. 2016 Sep 6;24(9):1590-8. doi: 10.1016/j.str.2016.05.022. Epub 2016 Aug, 11. PMID:27524203

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk] Biological Unit Coordinates (5dg4.pdb1.gz) 50 Kb Biological Unit Coordinates (5dg4.pdb2.gz) 48 Kb Biological Unit Coordinates (5dg4.pdb3.gz) 50 Kb Biological Unit Coordinates (5dg4.pdb4.gz) 49 Kb LPC: Ligand-Protein Contacts for 5DG4 CSU: Contacts of Structural Units for 5DG4 Structure Factors (1556 Kb) Retrieve 5DG4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DG4 from S2C, [Save to disk] Re-refined 5dg4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DG4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DG4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dg4_B] [5dg4_D] [5dg4] [5dg4_A] [5dg4_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5DG4

Community annotation for 5DG4 at PDBWiki (http://pdbwiki.org)

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