5DGD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CA, MG, TDP, TPP	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Mechanism-based inactivation of benzoylformate decarboxylase, a thiamin diphosphate-dependent enzyme., Bera AK, Polovnikova LS, Roestamadji J, Widlanski TS, Kenyon GL, McLeish MJ, Hasson MS, J Am Chem Soc. 2007 Apr 11;129(14):4120-1. Epub 2007 Mar 17. PMID:17367138

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk] Biological Unit Coordinates (5dgd.pdb1.gz) 988 Kb LPC: Ligand-Protein Contacts for 5DGD CSU: Contacts of Structural Units for 5DGD Structure Factors (1870 Kb) Retrieve 5DGD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DGD from S2C, [Save to disk] Re-refined 5dgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DGD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dgd] [5dgd_A] SWISS-PROT database:

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