OCA Atlas for 5DI1

5DI1

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

5DF

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

Discovery of an in Vivo Tool to Establish Proof-of-Concept for MAP4K4-Based Antidiabetic Treatment., Ammirati M, Bagley SW, Bhattacharya SK, Buckbinder L, Carlo AA, Conrad R, Cortes C, Dow RL, Dowling MS, El-Kattan A, Ford K, Guimaraes CR, Hepworth D, Jiao W, LaPerle J, Liu S, Londregan A, Loria PM, Mathiowetz AM, Munchhof M, Orr ST, Petersen DN, Price DA, Skoura A, Smith AC, Wang J, ACS Med Chem Lett. 2015 Oct 6;6(11):1128-33. doi: 10.1021/acsmedchemlett.5b00215., eCollection 2015 Nov 12. PMID:26617966

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]

Biological Unit Coordinates (5di1.pdb1.gz) 98 Kb

Biological Unit Coordinates (5di1.pdb2.gz) 102 Kb

Biological Unit Coordinates (5di1.pdb3.gz) 197 Kb

LPC: Ligand-Protein Contacts for 5DI1

CSU: Contacts of Structural Units for 5DI1

Structure Factors (220 Kb)

Retrieve 5DI1 in mmCIF format [Save to disk]

Re-refined 5di1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DI1 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5di1] [5di1_A] [5di1_B]

SWISS-PROT database:

Domain found in 5DI1: [S_TKc ] by SMART

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