5DIS Transport Protein date Sep 01, 2015
title Crystal Structure Of A Crm1-Rangtp-Spn1 Export Complex Bound Amino Acid Fg-Repeat Containing Fragment Of Nup214
authors T.Monecke, S.A.Port, A.Dickmanns, R.H.Kehlenbach, R.Ficner
compound source
Molecule: Exportin-1
Chain: A
Fragment: Unp Residues 5-1058
Synonym: Exp1,Chromosome Region Maintenance 1 Protein Homol
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Xpo1, Crm1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Gtp-Binding Nuclear Protein Ran
Chain: B
Fragment: Unp Residues 8-179
Synonym: Androgen Receptor-Associated Protein 24,Gtpase Ran Protein Tc4,Ras-Related Nuclear Protein;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ran, Ara24, Oksw-Cl.81
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Snurportin-1
Chain: C
Synonym: Rna U Transporter 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snupn, Rnut1, Spn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Maltose-Binding Periplasmic Protein,Nuclear Pore Protein Nup214;
Chain: D
Synonym: Mbp,Mmbp,Maltodextrin-Binding Protein,214 Kda Nucl Nucleoporin Nup214,Protein Can;
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12), Homo Sa
Organism_common: Human
Organism_taxid: 83333, 9606
Gene: Male, B4034, Jw3994, Nup214, Cain, Can, Kiaa0023
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.206 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.330 248.970 210.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand GLC, GTP, MG, PRO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein binding
  • intracellular transport of v...

  • B


    C


    D
  • carbohydrate transmembrane t...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (642 Kb) [Save to disk]
  • Biological Unit Coordinates (5dis.pdb1.gz) 634 Kb
  • LPC: Ligand-Protein Contacts for 5DIS
  • CSU: Contacts of Structural Units for 5DIS
  • Structure Factors (1599 Kb)
  • Retrieve 5DIS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DIS from S2C, [Save to disk]
  • Re-refined 5dis structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DIS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DIS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dis_D] [5dis_B] [5dis_C] [5dis] [5dis_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5DIS: [CRM1_C] [IBN_N] [RAN ] by SMART
  • Other resources with information on 5DIS
  • Community annotation for 5DIS at PDBWiki (http://pdbwiki.org)

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