5DJZ	Immune System	date	Sep 02, 2015
title	Fc Heterodimer Design 7.8 D399my407a + T366vk409v
authors	S.Atwell, A.Leaver-Fay, K.J.Froning, H.Aldaz, A.Pustilnik, F.Lu, F R.Yuan, S.H.Dhanani, A.K.Chamberlain, J.R.Fitchett, B.Gutierrez J.Hendle, S.J.Demarest, B.Kuhlman
compound		source
Molecule: Ig Gamma-1 Chain C Region Chain: A Fragment: Unp Residues 104-330 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ighg1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293 Expression_system_vector_type: Plasmid
Molecule: Ig Gamma-1 Chain C Region Chain: B Fragment: Unp Residues 104-330 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ighg1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293 Expression_system_vector_type: Plasmid
Molecule: Fc-III Peptide Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Cpc Scientific Inc., Sunnyvale Ca
symmetry	Space Group: P 21 21 21	R_factor 0.232 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.611 59.629 149.707 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	BMA, FUC, GAL, MAN, NAG	enzyme
Primary reference	Computationally Designed Bispecific Antibodies using Negative State Repertoires., Leaver-Fay A, Froning KJ, Atwell S, Aldaz H, Pustilnik A, Lu F, Huang F, Yuan R, Hassanali S, Chamberlain AK, Fitchett JR, Demarest SJ, Kuhlman B, Structure. 2016 Apr 5;24(4):641-51. doi: 10.1016/j.str.2016.02.013. Epub 2016 Mar, 17. PMID:26996964

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (5djz.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 5DJZ CSU: Contacts of Structural Units for 5DJZ Structure Factors (468 Kb) Retrieve 5DJZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DJZ from S2C, [Save to disk] Re-refined 5djz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DJZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DJZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5djz_C] [5djz_A] [5djz_B] [5djz] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5DJZ: [IG_like] [IGc1 ] by SMART

Other resources with information on 5DJZ

Community annotation for 5DJZ at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---