5DK8 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MG enzyme
Primary referenceNew crystal form of human ubiquitin in the presence of magnesium., Camara-Artigas A, Plaza-Garrido M, Martinez-Rodriguez S, Bacarizo J, Acta Crystallogr F Struct Biol Commun. 2016 Jan 1;72(Pt 1):29-35. doi:, 10.1107/S2053230X15023390. Epub 2016 Jan 1. PMID:26750481
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (5dk8.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (5dk8.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 5DK8
  • CSU: Contacts of Structural Units for 5DK8
  • Structure Factors (521 Kb)
  • Retrieve 5DK8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DK8 from S2C, [Save to disk]
  • Re-refined 5dk8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DK8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dk8] [5dk8_A] [5dk8_B]
  • SWISS-PROT database:
  • Domain found in 5DK8: [UBQ ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science