5DKJ		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	5BY, CL, MG	enzyme
Gene Ontology	Chain Function Process Component A, O proteasome core complex, alp... D, R proteasome core complex, alp... G, U proteasome core complex, alp... I, W endopeptidase activator acti... proteasome core complex, bet... J, X endopeptidase activator acti... proteasome core complex, bet... K, H, V, Y P, B proteasome core complex, alp... Q, C S, E proteasome core complex, alp... T, F proteasome core complex, alp... Z, L a, M proteasome core complex, bet... b, N proteasome core complex, bet...
Primary reference	Targeted Delivery of Proteasome Inhibitors to Somatostatin-Receptor-Expressing Cancer Cells by Octreotide Conjugation., Beck P, Cui H, Hegemann JD, Marahiel MA, Kruger A, Groll M, ChemMedChem. 2015 Dec;10(12):1969-73. doi: 10.1002/cmdc.201500449. Epub 2015 Oct , 16. PMID:26471124

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2042 Kb) [Save to disk] Biological Unit Coordinates (5dkj.pdb1.gz) 2028 Kb LPC: Ligand-Protein Contacts for 5DKJ CSU: Contacts of Structural Units for 5DKJ Structure Factors (4763 Kb) Retrieve 5DKJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DKJ from S2C, [Save to disk] Re-refined 5dkj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DKJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dkj_I] [5dkj] [5dkj_A] [5dkj_B] [5dkj_C] [5dkj_D] [5dkj_E] [5dkj_F] [5dkj_G] [5dkj_H] [5dkj_J] [5dkj_K] [5dkj_L] [5dkj_M] [5dkj_N] [5dkj_O] [5dkj_P] [5dkj_Q] [5dkj_R] [5dkj_S] [5dkj_T] [5dkj_U] [5dkj_V] [5dkj_W] [5dkj_X] [5dkj_Y] [5dkj_Z] [5dkj_a] [5dkj_b] SWISS-PROT database: Domain found in 5DKJ: [Proteasome_A_N ] by SMART

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